Package: rspiro 0.5

rspiro: Implementation of Spirometry Equations

Implementation of various spirometry equations in R, currently the GLI-2012 (Global Lung Initiative; Quanjer et al. 2012 <doi:10.1183/09031936.00080312>), the race-neutral GLI global 2022 (Global Lung Initiative; Bowerman et al. 2023 <doi:10.1164/rccm.202205-0963OC>), the NHANES3 (National Health and Nutrition Examination Survey; Hankinson et al. 1999 <doi:10.1164/ajrccm.159.1.9712108>) and the JRS 2014 (Japanese Respiratory Society; Kubota et al. 2014 <doi:10.1016/j.resinv.2014.03.003>) equations. Also the GLI-2017 diffusing capacity equations <doi:10.1183/13993003.00010-2017> are implemented. Contains user-friendly functions to calculate predicted and LLN (Lower Limit of Normal) values for different spirometric parameters such as FEV1 (Forced Expiratory Volume in 1 second), FVC (Forced Vital Capacity), etc, and to convert absolute spirometry measurements to percent (%) predicted and z-scores.

Authors:Theodore Lytras

rspiro_0.5.tar.gz
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rspiro.pdf |rspiro.html✨
rspiro/json (API)

# Install 'rspiro' in R:
install.packages('rspiro', repos = c('https://thlytras.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/thlytras/rspiro/issues

On CRAN:

5.08 score 15 stars 27 scripts 694 downloads 2 mentions 24 exports 0 dependencies

Last updated 5 months agofrom:02b6f4a95c. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-winOKNov 03 2024
R-4.5-linuxOKNov 03 2024
R-4.4-winOKNov 03 2024
R-4.4-macOKNov 03 2024
R-4.3-winOKNov 03 2024
R-4.3-macOKNov 03 2024

Exports:LLN_GLILLN_GLIdiffLLN_GLIglLLN_JRSLLN_NHANES3pctpred_GLIpctpred_GLIdiffpctpred_GLIglpctpred_JRSpctpred_NHANES3pred_GLIpred_GLIdiffpred_GLIglpred_JRSpred_NHANES3raw_GLIraw_GLIdiffraw_GLIglraw_JRSzscore_GLIzscore_GLIdiffzscore_GLIglzscore_JRSzscore_NHANES3

Dependencies:

Readme and manuals

Help Manual

Help pageTopics
rspiro: Brief overview of the packagerspiro-package rspiro
Calculate LLN of spirometry parameters using GLI-2012 equationsLLN_GLI
Calculate LLN of diffusing capacity parameters using GLI (2017) equationsLLN_GLIdiff
Calculate LLN of spirometry parameters using GLI global (2022) equationsLLN_GLIgl
Calculate LLN of spirometry parameters using JRS (2014) equationsLLN_JRS
Calculate predicted values of spirometry parameters using NHANES III equationsLLN_NHANES3
Convert spirometric values to % predicted using GLI-2012 equationspctpred_GLI
Convert diffusing capacity values to % predicted using GLI (2017) equationspctpred_GLIdiff
Convert spirometric values to % predicted using GLI global (2022) equationspctpred_GLIgl
Convert spirometric values to % predicted using JRS (2014) equationspctpred_JRS
Convert spirometric values to % predicted using NHANES III equationspctpred_NHANES3
Calculate predicted values of spirometry parameters using GLI-2012 equationspred_GLI
Calculate predicted values of diffusing capacity using GLI (2017) equationspred_GLIdiff
Calculate predicted values of spirometry parameters using GLI global (2022) equationspred_GLIgl
Calculate predicted values of spirometry parameters using JRS (2014) equationspred_JRS
Calculate predicted values of spirometry parameters using NHANES III equationspred_NHANES3
Convert z-scores back to raw spirometric values using GLI-2012 equationsraw_GLI
Convert z-scores back to raw diffusing capacity values using GLI (2017) equationsraw_GLIdiff
Convert z-scores back to raw spirometric values using GLI global (2022) equationsraw_GLIgl
Convert z-scores back to raw spirometric values using JRS (2014) equationsraw_JRS
Convert spirometric values to z-scores using GLI-2012 equationszscore_GLI
Convert diffusing capacity values to z-scores using GLI (2017) equationszscore_GLIdiff
Convert spirometric values to z-scores using GLI global (2022) equationszscore_GLIgl
Convert spirometric values to z-scores using JRS (2014) equationszscore_JRS
Convert spirometric values to z-scores using NHANES III equationszscore_NHANES3